Software Packages:

Package NameCollaboratorsReferenceFunction
GenomeHistory 1.0 Andreas WagnerNucleic Acids Research, 2002Duplicate gene identification
GenomeHistory 2.0 Andreas WagnerNucleic Acids Research, 2002Duplicate gene identification
GenomeHistory 2.1 Andreas WagnerNucleic Acids Research, 2002Duplicate gene identification
Parallel Genehunter Steve PlimptonJournal of Parallel and Distributed Computing, 2003 Parallel Genetic linkage analysis
Find_max_coverAndreas WagnerBMC Bioinformatics, 2004 Combination of sequence alignments
GenomeVxKen Wolfe Bioinformatics, 2008Circular chromosome visualization
GenomeVx 2.0Ken Wolfe Bioinformatics, 2008Circular chromosome visualization
POInTChris Pires, Yue Hao, Pat Edger Genetics, 2008,PLoS Genetics, 2018Modeling polyploidy evolution
POInTbrowseMustafa SiddiquiBMC Bioinformatics, 2023 Orthology browser for polyploids