Package Name | Collaborators | Reference | Function |
GenomeHistory 1.0 |
Andreas Wagner | Nucleic Acids Research, 2002 | Duplicate gene identification |
GenomeHistory 2.0 |
Andreas Wagner | Nucleic Acids Research, 2002 | Duplicate gene identification |
GenomeHistory 2.1 |
Andreas Wagner | Nucleic Acids Research, 2002 | Duplicate gene identification |
Parallel Genehunter |
Steve Plimpton | Journal of Parallel and Distributed Computing, 2003 |
Parallel Genetic linkage analysis |
Find_max_cover | Andreas Wagner | BMC Bioinformatics, 2004 |
Combination of sequence alignments |
GenomeVx | Ken Wolfe |
Bioinformatics, 2008 | Circular chromosome visualization |
GenomeVx 2.0 | Ken Wolfe |
Bioinformatics, 2008 | Circular chromosome visualization |
POInT | Chris Pires, Yue Hao, Pat Edger |
Genetics, 2008,PLoS Genetics, 2018 | Modeling polyploidy evolution |
POInTbrowse | Mustafa Siddiqui | BMC Bioinformatics, 2023 | Orthology browser for polyploids |